Starred repositories
ggchord is an R function built on ggplot2 that visualizes pairwise BLASTN alignment results as chord diagrams, intuitively displaying homologous regions between query and subject sequences.
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
🗂️A file list/WebDAV program that supports multiple storages, powered by Gin and Solidjs. / 一个支持多存储的文件列表/WebDAV程序，使用 Gin 和 Solidjs。
CoMed is a comprehensive framework for analyzing drug co-medication risks using Chain-of-Thought (CoT) reasoning and large language models. It automates the process of searching medical literature,…
A simple, fast and user-friendly alternative to 'find'
A versatile pairwise aligner for genomic and spliced nucleotide sequences
💥 Blazing fast terminal file manager written in Rust, based on async I/O.
Local version of the virus identification and analysis web server (tool set)
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.
A flexible framework powered by ComfyUI for generating personalized Nobel Prize images.
Implementation of Alphafold 3 from Google Deepmind in Pytorch
ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
A curated list of resources for using LLMs to develop more competitive grant applications.
Bioconductor facilities for parallel evaluation
Copy number variant detection from targeted DNA sequencing
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.