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Starred repositories

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Repository to propose and discuss lineages

Python 50 3 Updated Jun 30, 2025

Influenza data pipeline to automate genotyping assignment

Python 35 10 Updated Jun 4, 2025

R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

R 15 5 Updated Jun 26, 2025

Track and evaluate the performance of your investment portfolio across stocks, cryptocurrencies, and other assets.

Java 3,270 674 Updated Jul 3, 2025

WID.world codes used to create the entire database from both the researcher’s data and official sources.

Stata 44 17 Updated Jun 9, 2025
R 30 2 Updated Jul 4, 2025

Official place for proposals and details around monkeypox virus lineage designations

Python 23 3 Updated Mar 26, 2025
Python 15 6 Updated Jun 26, 2025

R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

R 13 2 Updated Jun 24, 2025

R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

R 35 13 Updated Jun 24, 2025

A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.

R 19 1 Updated Oct 24, 2024

Programmatically interact with the GISAID database.

R 75 9 Updated Apr 3, 2025

Simple command line utility for converting .doc & .xls files to any supported format such as Text, RTF, CSV or PDF

Pascal 484 58 Updated Jun 22, 2025

Shiny app for tfpscanner

R 4 3 Updated Jun 13, 2024

Transmission fitness polymorphism scanner

R 7 3 Updated Apr 15, 2024

Simple Features for R

R 1,378 302 Updated Jun 27, 2025

Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline fits

R 25 4 Updated Apr 24, 2023
9340 R 1 Updated Apr 10, 2021

Colors for all (R package)

R 347 16 Updated Jan 29, 2025

table farming

R 596 87 Updated May 31, 2025

Repository for suggesting new lineages that should be added to the current scheme

Jupyter Notebook 1,064 102 Updated Jul 4, 2025

Tools for reading SDMX data and metadata in R

R 106 35 Updated Mar 31, 2025

R tools for Eurostat data

R 245 49 Updated Jun 25, 2025

Data quality assessment and metadata reporting for data frames and database tables

R 970 59 Updated Jun 12, 2025

validate your data and create nice reports straight from R

HTML 148 15 Updated Apr 18, 2024

https://doi.org/10.5281/zenodo.5163263

R 62 22 Updated Sep 14, 2023

Templates for document and graphs used within Sciensano

R 2 Updated Mar 29, 2022

Tools for message passing between processes

R 56 2 Updated Feb 10, 2023
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