Stars
Download FASTQ files from SRA or ENA repositories.
R package for variational Bayesian clustering and variable selection for discrete biomedical data.
A compendium of absurd "open-source" licenses.
A work in progress Snakemake workflow for cohort studies in oncology
markowetzlab / QDNAseq.hg38
Forked from asntech/QDNAseq.hg38QDNAseq bin annotation for hg38
A post sequencing QC tool for Oxford Nanopore sequencers
calling absolute copy numbers on single cell DNA sequencing data - stagging repo for public release
A tool for somatic structural variant calling using long reads
Pipeline for the generation of absolute copy number profiles from shallow whole genome sequencing data
Quantifying copy number signatures from absolute copy number profiles
Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"
Mutational signature analysis for low statistics SNV data
Support Types for Variables, Arguments, and Return Values
Copy number caller for long read data including SNV utilization
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Long read production pipelines