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  • scPS Public

    Gene set analysis: single-cell pathway score (scPS)

    R 1 1 GNU General Public License v3.0 Updated Apr 2, 2025

  • scBONITA2 Public

    Python GNU General Public License v3.0 Updated Mar 1, 2025

  • BONITA-Python3 Public

    Python3 command-line tool for the inference of Boolean rules and pathway analysis on omics data

    Python 4 2 MIT License Updated May 15, 2024

  • scBONITA_attractor_analysis Public

    Jupyter Notebook 2 Updated Nov 2, 2023

  • scBONITA Public

    Regulatory rule inference, pathway analysis, and cell signaling analysis with scRNAseq data

    Python 8 2 MIT License Updated Jul 26, 2023

  • mBONITA Public

    Forked from muktapalshikar/mBONITA
    HTML 6 1 MIT License Updated Feb 12, 2023

  • WikiNetworks Public

    WikiNetworks is a user-friendly Python package to process pathways from the WikiPathways database into machine-readable network representations.

    Python 6 5 MIT License Updated Nov 7, 2022

  • BONITA Public

    Python package for the inference of Boolean rules and pathway analysis on omics data

    Python 4 8 Updated Apr 6, 2022

  • ML_Exposure_Prediction Public

    MATLAB MIT License Updated Jul 12, 2018

  • FUNNEL-GSEA-R-Package Public

    R Updated Jun 7, 2017

  • FIGS Public

    Fuzzy Inference of Gene-Sets (FIGS)

    MATLAB 1 MIT License Updated Apr 10, 2017

  • FIGS-Influenza Public

    Fuzzy Inference of Gene-Sets (FIGS) [Influenza study on dendritic cell and A549 epithelial cells]

    1 MIT License Updated Mar 21, 2017

  • BETA Public

    BETA: Bayesian Estimation of Transcription Factor Activity

    R 1 MIT License Updated Aug 23, 2016

  • GESPA Public

    GEnomic Single nucleotide Polymorphism Analyzer (GESPA) is a novel bioinformatics tool to determine the pathogenicity and phenotypes of nsSNPs.

    Java GNU General Public License v3.0 Updated Aug 17, 2016
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