Stars
Python library to facilitate genome assembly, annotation, and comparative genomics
Making Protein folding accessible to all!
Personal diploid genome creation and coordinate conversion
Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
A smart terminal assistant that helps you find the right command.
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON
seqeralabs / rnaseq-nf
Forked from nextflow-io/rnaseq-nfA proof of concept of RNAseq pipeline
Workflow for germline short variant discovery using GATK4
Collection of bioinformatics training materials
Evolutionary couplings from protein and RNA sequence alignments
A generative latent variable model for biological sequence families.
An easy-to-use, flexible website template for labs.
Genome-wide Efficient Mixed Model Association
OATML-Markslab / EVE
Forked from OATML/EVEOfficial repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
This repository hosts the software package for BalLeRMix+, an extension of BalLeRMix that can jointly detect recent positive selection and long-term balancing selection.
A fast, scalable, and accurate local ancestry method.
Unix, R and python tools for genomics and data science
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
🌺 reference-free transcriptome assembly for short and long reads
official implementation of the PatchPerPix instance segmentation method
WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans
Chromosome-level scaffolding using multiple references