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PasTaco / Microarray
Forked from VergaJU/MicroarrayContainer and scripts to analyse microarray data
CheshireCat pugin to do literature research on PubMed Central
Tutorial on large language models for genomics
Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
Code and small scripts for data presented by Micheál Ó Dálaigh at the PacBio Data Day at the University of Bern on the 22nd of January, 2025.
Repository containing all the scripts and the models used for the analysis
compton study (forked 16-05-24)
BarryDigby / sarek
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
BarryDigby / rnafusion
Forked from nf-core/rnafusionRNA-seq analysis pipeline for detection gene-fusions
BarryDigby / containers
Forked from BioContainers/containersBioinformatics containers
dockerfile for circRNA finder Westholm et al.
BarryDigby / modules
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
BarryDigby / CIRIquant
Forked from bioinfo-biols/CIRIquantcircular RNA quantification tools
Testing building mulled containers for multi-requirement tools.
BarryDigby / circRNA_finder-1
Forked from orzechoj/circRNA_finderPipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).
BarryDigby / smrnaseq
Forked from nf-core/smrnaseqA small-RNA sequencing analysis pipeline
Conda recipes for the bioconda channel.