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q2-gglasso Public
QIIME 2 plugin which contains algorithms for solving General Graphical Lasso (GGLasso) problems
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MPRAsnakeflow_tutorial Public
Forked from kircherlab/MPRAsnakeflow_tutorialJupyter Notebook UpdatedMay 21, 2025 -
library-plugins Public
Forked from qiime2/library-pluginsStores a list of the repos that are included in the QIIME 2 library
BSD 3-Clause "New" or "Revised" License UpdatedMar 28, 2025 -
bio-datascience.github.io Public
Forked from bio-datascience/bio-datascience.github.ioThis is the repository for our group's webpage
HTML Other UpdatedMar 17, 2025 -
q2-classo Public
Forked from Leo-Simpson/q2-classoConstrained sparse regression and classification
Python UpdatedMar 12, 2025 -
A tutorial for using a randomization-based causal inference framework with sparse+low-rank graphical models in microbiome data analysis.
Jupyter Notebook MIT License UpdatedMar 4, 2025 -
GGLasso Public template
Forked from fabian-sp/GGLassoImplementations for solving the Group and Fused Graphical Lasso problem
Python MIT License UpdatedMar 1, 2025 -
ProDG Public
a Python library for generating synthetic data based on different probability distributions. It's specifically designed for prokaryotic data but can be used for any zero-inflated compositional data.
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anvio Public
Forked from merenlab/anvioAn analysis and visualization platform for 'omics data
Python GNU General Public License v3.0 UpdatedMar 20, 2024 -
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test_latentcorr Public
Beta testing of the library estimating latent correlation latent with mixed data types
Jupyter Notebook UpdatedDec 5, 2022 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 16, 2022 -
regain Public
Forked from fdtomasi/regainREGAIN (Regularised Graphical Inference)
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedAug 8, 2022 -
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MB-GAN Public
Forked from zhanxw/MB-GANMicrobiome Simulation via Generative Adversarial Network
Jupyter Notebook GNU General Public License v3.0 UpdatedJun 9, 2022 -
brain_challenge Public
Network Analysis and Sex Prediction Based on Whole Brain Connectome
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Causal_Microbiome_Tutorial Public
Forked from bio-datascience/Causal_Microbiome_TutorialCausal inference framework for environment-microbiome data applied to American Gut data.
R UpdatedApr 18, 2022 -
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isb_course_2021 Public
Forked from Gibbons-Lab/isb_course_2021Materials and presentations for the 2021 ISB Virtual Microbiome Series.
Jupyter Notebook Apache License 2.0 UpdatedOct 13, 2021 -
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q2-plugin-template Public template
Forked from bokulich-lab/q2-plugin-templateA skeleton for QIIME 2 plugins
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 17, 2021 -
scikit-learn Public
Forked from scikit-learn/scikit-learnscikit-learn: machine learning in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 4, 2021 -
q2-SCNIC Public
Forked from lozuponelab/q2-SCNICA QIIME2 plugin for running SCNIC
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 26, 2020 -
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nlp_adversarial_examples Public
Forked from nesl/nlp_adversarial_examplesImplementation code for the paper "Generating Natural Language Adversarial Examples"
Jupyter Notebook MIT License UpdatedMay 13, 2020 -
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