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WarrenLab

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  1. minigraph-cactus-nf minigraph-cactus-nf Public

    a nextflow pipeline for creating a pangenome with minigraph-cactus

    Nextflow 15 4

  2. chicken-pangenome-paper chicken-pangenome-paper Public

    Scripts used to perform analyses in Rice et al. (2023)

    Jupyter Notebook 15 3

  3. hic-scaffolding-nf hic-scaffolding-nf Public

    Nextflow pipeline for scaffolding genome assemblies with Hi-C reads

    Nextflow 14 5

  4. agptools agptools Public

    Tools for working with agp files

    Python 13 3

  5. single-cell single-cell Public

    Pipelines and scripts for single-cell best practices

    R 7 2

  6. purge-haplotigs-nf purge-haplotigs-nf Public

    Nextflow workflow for purging haplotigs from a genome assembly

    Nextflow 4

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