massdatabase is a part of tidymass
massdatabase is an R package that operates the online public databases and combines with other tools for streamlined compound annotation and pathway enrichment analysis. massDatabase is a flexible, simple, and powerful tool that can be installed on all platforms, allowing the users to leverage all the online public databases for biological function mining.
You can install massdatabase from GitLab
if(!require(remotes)){
install.packages("remotes")
}
remotes::install_gitlab("jaspershen/massdatabase")or Github
remotes::install_github("tidymass/massdatabase")Please see the Help documents page to get the instruction of massDatabase.
If you have any questions about massdatabase, please don’t hesitate to email me (shenxt@stanford.edu).
M339, Alway Buidling, Cooper Lane, Palo Alto, CA 94304
If you use massdatabase in your publications, please cite this paper:
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massDatabase: utilities for the operation of the public compound and pathway database. Web Link
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Shen, X., Yan, H., Wang, C. et al. TidyMass an object-oriented reproducible analysis framework for LC–MS data. Nat Commun 13, 4365 (2022). Web Link.
Thanks very much!