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Python 163 12 Updated Mar 2, 2024

Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)

Python 16 Updated May 12, 2025

This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)

Python 77 12 Updated May 17, 2025
Python 110 7 Updated May 6, 2025

Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)

Jupyter Notebook 75 13 Updated May 25, 2025

Official code for paper "Beyond Sole Strength: Customized Ensembles for Generalized Vision-Language Models, ICML2024"

Python 24 2 Updated Feb 2, 2025

Official code for "Simpler is Better: Few-shot Semantic Segmentation with Classifier Weight Transformer. ICCV2021".

Python 133 24 Updated Jan 24, 2022
Python 22 1 Updated Jan 13, 2025

Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)

Python 70 5 Updated Apr 16, 2025

NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement

Python 48 6 Updated Oct 28, 2023

RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching

Python 60 4 Updated Aug 11, 2024

Code for running RFdiffusion

Python 2,199 441 Updated Apr 11, 2025

List of papers about Proteins Design using Deep Learning

1,675 197 Updated May 23, 2025

The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics

Python 181 9 Updated Sep 18, 2024
Python 18 4 Updated Jan 14, 2025
Python 2 1 Updated Apr 5, 2024
Python 4 Updated Apr 8, 2024
Python 18 4 Updated May 3, 2024
Python 1 Updated Sep 18, 2024

[ICLR2025] Kolmogorov-Arnold Transformer

Python 776 49 Updated Mar 23, 2025

Code for TNNLS paper "Homophily-Enhanced Self-supervision for Graph Structure Learning: Insights and Directions"

Python 15 2 Updated Feb 27, 2024

Code for CVPR 2019 paper Label Propagation for Deep Semi-supervised Learning

Shell 116 17 Updated Jun 11, 2020
Python 29 2 Updated Mar 4, 2024
Python 16 4 Updated Dec 9, 2023
Python 8 1 Updated Mar 2, 2024

Code for SpecNet2

MATLAB 3 Updated Mar 12, 2023

Deep network that performs spectral clustering

Python 49 7 Updated May 24, 2024
Python 2 Updated Mar 20, 2022

Awesome Papers About Performing Prompting On Graphs

390 26 Updated May 15, 2025
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