Stars
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
A set of tools to compare and manipulate the contents of EingenStrat databases, and to calculate SNP coverage statistics in such databases.
Scripts for analysis used during the course
Bayesian Mixed Model for infer ancestry proportions from coancestry matrix
Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
Haplotype-based inference of recent effective population size in modern and ancient DNA samples
Chromopainter analysis for "Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons"
Here we present a method to plot the outputs of RFMIX version 2
basic tool to convert from phased vcf to chromopainter format
Materials for workshop on basic genome-wide data analysis in Thailand, Nov. 2023
A pipeline that accepts a VCF file to run through Admixture