Stars
The second version of the Kraken taxonomic sequence classification system
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Data and tools for veterinary genomics and metagenomics
This is the development home of the workflow management system Snakemake. For general information, see
A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
A tutorial on how to set up a Linux environment on a computer running Windows 10. Followed by how to install and use (bio)conda.
Open prediction of Polysaccharide Utilisation Loci (PUL)
WatsonLab / MAGpy
Forked from mw55309/MAGpySnakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
Perl script to download the 1003 GEBA genomes doi:10.1038/nbt.3886