Starred repositories
ImgLib2-based viewer for registered SPIM stacks and more
Utility for visualizing results on the fly in neuroglancer
Agent Framework / shim to use Pydantic with LLMs
Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for training 2D and 3D models, workflows for prediction and post…
Spark version of RS-FISH that can analyze large N5 volumes in a distributed fashion locally, on the cluster or in the cloud
Repository of model architectures and network weights used for CellMap segmentations.
A framework for easy application of established machine learning techniques on large, multi-dimensional images.
A pilot experiment to dissminate information about Janelia's biomaging data formats.
Docker Containerization of the Multiview Registration Plugin (https://github.com/preibischLab/multiview-reconstruction).
An extremely easy way to perform background processing in Java. Backed by persistent storage. Open and free for commercial use.
Pytorch framework for doing deep learning on point clouds.
Versioned Storage Java SDK: Block based versioned data storage.
Tool for precise, interactive, fast and scalable FISH spot detection
TornadoVM: A practical and efficient heterogeneous programming framework for managed languages
Simple PHP script for notifying for a free appointments on the Berlin services website.
ImgLib2/BDV implementation of Stitching for large datasets
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
Distribute processing software manager to handle big tasks using limited resources and time.
First project for CVND: facial keypoint detection using PyTorch GPU.