Stars
A method to identify structural variation from sequencing data in target regions
no_std Hardware Abstraction Layers for ESP32 microcontrollers
embedded-hal implementation for Rust on ESP32 and ESP-IDF
Position-wise analysis of sequencing and genomics data
The self-managing, auto-upgrading, Kubernetes distribution for everyone
Database manager for MySQL, PostgreSQL, SQL Server, MongoDB, SQLite and others. Runs under Windows, Linux, Mac or as web application
Interactive Data Visualization in the browser, from Python
Gantt Gantt Gantt Timeline Schedule Calendar [ javascript gantt, js gantt, projects gantt, timeline, scheduler, gantt timeline, reservation timeline, react gantt, angular gantt, vue gantt, svelte g…
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
Positron, a next-generation data science IDE
Standalone Python re-implementation of the POLCA polisher from MaSuRCA
A new markup-based typesetting system that is powerful and easy to learn.
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
Plotting scripts for long read sequencing data
A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It u…
A WGS de novo assembler based on the FMD-index for large gen 63C6 omes
Structural variant and indel caller for mapped sequencing data
Transcript quantification import for modular pipelines
🐉 🪰 Assemble bacterial isolate genomes from Nanopore reads