Stars
Interactive and integrated analysis of multiplexed tissue microarrays
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
🔬 Path to a free self-taught education in Bioinformatics!
A DSL for data-driven computational pipelines
Library for reading and writing large multi-dimensional arrays.
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
A collection of popular layouts and patterns made with CSS. Now it has 100+ patterns and continues growing!
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
This is the Rust course used by the Android team at Google. It provides you the material to quickly teach Rust.
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Specification for the Workflow Description Language (WDL).
Accelerated genomics workflows in the Workflow Description Language
Accelerated genomics workflows in NextFlow
SDK for GPU accelerated genome assembly and analysis
Examples of single-cell genomic analysis accelerated with RAPIDS
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
simple overview of python, numpy, scipy, matplotlib functions that are useful for scientific work
CUDA Python: Performance meets Productivity
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Microbial Genome Circular plotting tool for comparative genomics using Circos