Stars
Microbial co-occurrence network inferred from Earth Microbiome Project
A genome completeness evaluation tool based on miniprot
Utilities to run and find consensus sequence over the BlastN results.
This project contain useful for Rust projects.
Mycelium API Gateway, the ultimate solution for secure, flexible, and multi-tenant API management
amvarani / shinyCircos
Forked from YaoLab-Bioinfo/shinyCircosan R/shiny application for creation of Circos plot interactively
amvarani / biocode
Forked from jorvis/biocodeBioinformatics code libraries and scripts
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Data and Code associated to Simonin et al. 2021 BioRxiv Seed Microbiota Database
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace. These videos ma…
Applications for Metatranscriptomics Data Analysis
Short lessons from FAS Informatics coffee hour
Best practices and workflow for genome annotation
A set of protocols and pipelines for construction and analysis of 16S rRNA amplicon libraries
Proteomic Information Navigated Genomic Outlook (PRINGO) + Transposon Identification Nominative Genome Overview (TINGO).
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
CMGfunc, functional protein annotation of bacterial proteins (Comparative Microbial Genomics functions)
Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.
tools for assessing the accuracy of genome assemblies
A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpus Christi, TX (January 15-19, 2018)
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…