Stars
Repository for some archlinux tools I've written
Pipeline components for real-time phylodynamic analysis
Sequence correction provided by ONT Research
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
Filtering and trimming of long read sequencing data
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
TULIP - The Uncorrected Long read Itegration Pipeline
Tools (written in C using htslib) for manipulating next-generation sequencing data
a toolkit for working with Oxford nanopore data
A single molecule sequence assembler for genomes large and small.
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which…