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v1.7.0

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update gene name matching rule and fusion exclude list filtering rule (…

…stjude#66)

* update gene name matching rule and fusion exclude list filtering rule

* update gene name matching rule and fusion exclude list filtering rule

* update gene name matching rule and fusion exclude list filtering rule

* Apply suggestions from code review

* Update CiceroUtil.pm

Add exist_multiplename_checking as an export of CiceroUtil.pm

* Update file name

* Additional code cleanup

* Add missing semicolon

Co-authored-by: Tian <ltian@noderome162.cm.cluster>
Co-authored-by: Tian <ltian@noderome102.cm.cluster>

v1.7.0-alpha

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Apply suggestions from code review

v1.6.0

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Update cgc.yml

v1.5.1

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Update publish.yml

Fix typo evn -> env

v.1.5.0

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Rename output file (stjude#58)

* Rename output file

* Add output rename in workflow

* Update Cicero.sh

v1.4.4

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Support .bai by normalizing index name (stjude#56)

* Support .bai by normalizing index name

* Support .bai by normalizing index name

* Add RNApeg+CICERO CWL workflow

v1.4.3

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Add flag to control out file name (stjude#53)

* Added abilty to rename output file

* Correct bash script typo

v1.4.2

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Merge pull request stjude#52 from jordan-rash/master

CWL + GHA (releases)

v1.4.1

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Increment version for DNAnexus

v1.4.0

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Releasing v1.4.0 on DNAnexus (stjude#47)
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