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Useful scripts to manipulate SQLite chemical databases

Python 6 3 Updated Jul 20, 2023

A General Public Dictionary of Common Chemical Names to their Molecular Definition

Jupyter Notebook 21 3 Updated Oct 2, 2023

Tools that can be used for molecular docking analysis

Jupyter Notebook 8 1 Updated Jul 21, 2024
Jupyter Notebook 3 3 Updated Sep 10, 2021

Practical Cheminformatics Tutorials

Jupyter Notebook 1,000 177 Updated May 23, 2025

Open source code for AlphaFold 2.

Python 13,547 2,404 Updated Mar 18, 2025

DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences

Python 75 60 Updated Feb 14, 2022
Python 43 11 Updated Apr 21, 2022

📺 Discover the latest machine learning / AI courses on YouTube.

16,576 1,994 Updated Jan 22, 2024

🧪📈 🐍. The purpose of the panel-chemistry project is to make it really easy for you to do DATA ANALYSIS and build powerful DATA AND VIZ APPLICATIONS within the domain of Chemistry using using Python…

Python 119 17 Updated Nov 25, 2023

Analysis of contacts in molecular dynamics trajectories

Python 42 13 Updated Nov 4, 2019

Implementation of the SolTranNet tool utilizing the molecular transformer to predict aqueous solubility

Python 39 15 Updated Jul 6, 2021

Molecular optimization by capturing chemist’s intuition using the Seq2Seq with attention and the Transformer

Python 148 38 Updated Mar 16, 2023
Python 89 19 Updated Feb 24, 2025

A Highly Opinionated List of Open Source Cheminformatics Resources

189 28 Updated Nov 19, 2020

Tools for consuming drug information databases with several formats and export them normalized into CSV for further purposes

Jupyter Notebook 1 4 Updated Jan 24, 2019

messing around with drug discovery and machine-learning

Jupyter Notebook 3 2 Updated Apr 24, 2020

AI and Machine Learning with Kubeflow, Amazon EKS, and SageMaker

Jupyter Notebook 1 Updated Jul 25, 2020

Resources for a 3.5 hour workshop on machine learning using the MLJ toolbox

Jupyter Notebook 1 Updated Jul 28, 2020

Python for chemoinformatics

Jupyter Notebook 112 30 Updated Feb 10, 2021

Useful bash one-liners for bioinformatics.

1,917 522 Updated Sep 9, 2023

Kinome-wide structural pocket similarity

Jupyter Notebook 10 3 Updated Dec 26, 2022

Extended Connectivity Interaction Features

Jupyter Notebook 30 14 Updated Sep 23, 2021

This repository contains code for the paper: Beyond Generative Models: Superfast Traversal, Optimization, Novelty, Exploration and Discovery (STONED) Algorithm for Molecules using SELFIES

Jupyter Notebook 127 38 Updated Aug 13, 2024

Kinase-focused fragment library

Jupyter Notebook 65 14 Updated May 29, 2025

Code to accompany my blog post Examining the Data From the ChEMBL SARS-Cov-2 Drug Repurposing Screens

Jupyter Notebook 4 Updated Aug 22, 2020

CReM: chemically reasonable mutations framework

Jupyter Notebook 234 41 Updated May 26, 2025
Jupyter Notebook 32 18 Updated Apr 18, 2025

The official sources for the RDKit library

HTML 2,929 922 Updated May 27, 2025

An open, extensible Python framework for GPU-accelerated alchemical free energy calculations.

Python 185 71 Updated Jul 6, 2023
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