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CLOCI (Co-occurrence Locus and Orthologous Cluster Identifier) identifies gene clusters using multiple proxies of selection for coordinated gene evolution. In the process, CLOCI circumscribes loci …
Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparative genomics.
Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis
Foster the development of impactful AI models in drug discovery.
a *biosynformatic* fingerprint to explore natural product distance and diversity
This project is utilizing metabolomics and machine learning to classify natural product based on their known bioactive drug class.
Repository for the paper A generative artificial intelligence approach for antibiotic optimization
pyPept: a python library to generate atomistic 2D and 3D representations of peptides
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
Data and machine learning functionality of decRiPPter2
A simple Kanban board using Flask and SQLite
The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry centric fashion.
Python package to generate ugly real-looking csvs.
The missing Python utility to read and write compressed JSONs.
Repository containing entries following the MITE data standard
A repository containing the MITE JSON schema and auxiliary files