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Abra2 collapses genomic duplication in assembly, leading to false realignments

#66

· fbattke opened

on Jun 18, 2025

Realignment Error example for small duplication

#65

· camillebenoist opened

on Mar 17, 2025

Possible issues for large genome (No index is available for this BAM file. and exceeding integer length in GTF file)

#64

· JuiTse opened

on Jan 17, 2025

abra2 error java.lang.NumberFormatException

#63

· C-YONG opened

on Dec 4, 2024

Window size vs targets - using targets only?

#62

· ranasats opened

on Nov 20, 2024

Abra2-processed bams are incompatible with Strelka2

#61

· lculibrk opened

on Apr 10, 2024

Specific case that ABRA2 is not realigning correctly

#60

· parsaeskandar opened

on Feb 12, 2024

IndelRealigner-parameters vs Abra2-parameters

#59

· Manuel-DominguezCBG opened

on Nov 9, 2023

How to shorten run time

#58

· jingjing578 opened

on Oct 13, 2023

build fails on linux

#57

· yangxingyu588 opened

on Sep 9, 2023

Unknown format conversion exception

#56

· abhiku0007 opened

on Aug 26, 2023

Fusions

#55

· gitMakeCoffee opened

on Mar 24, 2023

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