Releases · mriffle/nf-skyline-dia-ms

Fix handling of Cascadia results with n-terminal modifications.

Use with -r v2.6.3

Give Skyline import mzML step a longer default timeout.

Use with -r v2.6.2

Update pdc_client docker to version 2.0.1
Add params.skyline.fasta option so a separate fasta file can be used for DIA search and skyline import
When files are downloaded from the PDC, name the Skyline document with the PDC study name if params.skyline.document_name is not specified.
Update minimum version of nextflow to 23.04.2 so that splitJson channel operator can be used.

Use with -r v2.6.1

Add support for Cascadia de novo DIA search engine.

To use cascadia, specify search_engine = 'cascadia' in your Nextflow config file.
Use cascadia.use_gpu = true to use a GPU if one is available.

Run with -r v2.6.0

A recent change to LabKey Server changed the security model and broke the ability for the workflow to pull data from Panorama Public.

This update restores the ability for the workflow to pull data from Panorama Public.

Run with -r v2.5.5

This is the initial official release of the workflow.

Specify running this version of the workflow with: -r v2.5.4

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