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Python 3 Updated Dec 26, 2024
R 9 2 Updated Apr 29, 2021

🐚 Python-powered shell. Full-featured and cross-platform.

Python 8,789 667 Updated May 26, 2025

An awesome tool to visualize snakemake rule graphs

Python 9 Updated Mar 26, 2025

Streamlink is a CLI utility which pipes video streams from various services into a video player

Python 10,552 1,136 Updated May 22, 2025

R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)

R 16 3 Updated May 21, 2025

The new source code of the LinearFold, linear-time prediction for RNA secondary structures

C++ 171 50 Updated Apr 4, 2024

A drop-in replacement for dplyr, powered by DuckDB for speed.

R 323 20 Updated May 10, 2025

A package for creating monochrome colour palettes and easily converting rgba values to hex codes

R 79 1 Updated Oct 31, 2024

Scaling Single Cell Analysis to Millions of Cells

C++ 210 22 Updated May 19, 2025

A command-line utility, a la samtools, that helps to manage and manipulate single-cell data files

Python 2 Updated Aug 27, 2021

🎨🎨🎨 Collection of most color palettes in a single R package

R 976 49 Updated Jun 24, 2024

Mobile Shell

C++ 12,959 753 Updated Jul 17, 2024

Simple utilities to manage R environments

R 16 1 Updated Apr 19, 2024

R package implementation of Milo for testing for differential abundance in KNN graphs

R 379 23 Updated Nov 20, 2024

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

241 58 Updated Nov 28, 2022

Rank-To-Group score evaluates contribution of confounding factors

Jupyter Notebook 21 1 Updated Nov 3, 2021

Middleware to create RSS feeds, filter existing feeds and transform them (e.g. fulltext)

HTML 317 30 Updated May 25, 2025

Authentication Plug-in for PHPBB using External MySQL Table Source

PHP 3 3 Updated May 4, 2012

Nyxt - the hacker's browser.

Common Lisp 10,409 435 Updated May 28, 2025

πŸ’€ A Hackable, Fully Featured, Rice Friendly Neovim Configuration

Vim Script 292 11 Updated Jan 24, 2023

Analyzing and visualizing KEGG information using the grammar of graphics

R 229 16 Updated Mar 29, 2025

A new markup-based typesetting system that is powerful and easy to learn.

Rust 40,835 1,108 Updated May 24, 2025

A package management tools for R

HTML 317 40 Updated Feb 22, 2024

Significance analysis for clustering single-cell RNA-sequencing data

HTML 116 13 Updated Sep 7, 2024

Rich is a Python library for rich text and beautiful formatting in the terminal.

Python 52,156 1,836 Updated May 19, 2025

R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.

R 29 8 Updated Jun 4, 2023

Custom regex filter list for use with Pi-hole.

Python 1,352 171 Updated Apr 27, 2024
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