Stars
A list of interesting genome browser and genome visualization programs
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
a short-read polishing tool for long-read assemblies
Minimal but speedy quality control for nanopore reads in Rust 🐻
DEPRECATED - Teselagen's Open Source Vector/Plasmid Editor Component
Fast summary of fastq files (length, mean quality and qscore distribution)
Webserver and command line tool for annotating engineered plasmids
This is the repo for the 5 tiger teams involved in the single-cell annotations
Analysis code for the GSFA manuscript "A novel Bayesian factor analysis method improves detection of genes and biological processes affected by perturbations in single-cell CRISPR screening"
Evaluation framework for computationally inferred gene networks from single-cell data.
fairliereese / modelad_pipeline
Forked from jazsakr/lr_blk_smkPyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
Code for the ENCODE4 single-nucleus mouse analysis.
Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data
pipreqs - Generate pip requirements.txt file based on imports of any project. Looking for maintainers to move this project forward.
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
Scripts to import ENCODE processed data for snRNA-seq experiments and snATAC-seq experiments to Seurat and ArchR objects, respectively.