Stars
Tools (written in C using htslib) for manipulating next-generation sequencing data
High accuracy RAG for answering questions from scientific documents with citations
User-friendly, no-code collection of solutions to ease the learning curve of the note taking app Obsidian. Specifically aimed at casual users who can't/don't want to code or use complicated communi…
E-Ink Display with a Raspberry Pi and a Web Interface to customize and update the display with various plugins
A comprehensive library for computational molecular biology
Python GUIs for Humans! PySimpleGUI is the top-rated Python application development environment. Launched in 2018 and actively developed, maintained, and supported in 2024. Transforms tkinter, Qt, …
Open-Source package for segmentation and analysis of gel electrophoresis images using machine learning. Both a python framework for training/running models and a QuPath GUI extension are available.
The commands and processes I run to setup a new Mac computer
A Quarto Extension to schedule the publication of documents in websites and blogs.
Controlled and automated image and video recording with the raspberry pi
A curated list of Quarto talks, tools, examples & articles! Contributions welcome!
A Quarto extension to embed PDF files in HTML formats
Website for the KU Affective Communication and Computing Lab
🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.
sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.
Pympress is a simple yet powerful PDF reader designed for dual-screen presentations
add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.
A new markup-based typesetting system that is powerful and easy to learn.
A modern python package for semi-automated gel electrophoresis analysis (Agarose, PAGE, ...)