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Starred repositories
An extremely fast Python type checker and language server, written in Rust.
BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
A course on aligning smol models.
ToolUniverse is a collection of biomedical tools designed for AI agents
The official Python SDK for Model Context Protocol servers and clients
this repo contains code for llms to take in story beats and produce prose
Benchmark for LLM-based Agents in Computational Biology
Model Context Protocol Servers
🤗 smolagents: a barebones library for agents that think in code.
User friendly and accurate binder design pipeline
Fast & Simple repository for pre-training and fine-tuning T5-style models
All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
A programming framework for agentic AI 🤖 PyPi: autogen-agentchat Discord: https://aka.ms/autogen-discord Office Hour: https://aka.ms/autogen-officehour
High accuracy RAG for answering questions from scientific documents with citations
Chai-1, SOTA model for biomolecular structure prediction
Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http://bit.ly/cheap-proteins
Benchmark for Biophysical Sequence Optimization Algorithms
Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
Transform datasets at scale. Optimize datasets for fast AI model training.
Code for 'LLM2Vec: Large Language Models Are Secretly Powerful Text Encoders'