Nextstrain

nextstrain.org Public
The Nextstrain website

nextstrain/nextstrain.org’s past year of commit activity

JavaScript 96 AGPL-3.0 50 72 14 Updated Jun 28, 2025
zika Public
Nextstrain build for Zika virus

nextstrain/zika’s past year of commit activity

Python 9 11 3 1 Updated Jun 27, 2025
ebola Public
Nextstrain build for Ebola virus

nextstrain/ebola’s past year of commit activity

Python 3 9 5 3 Updated Jun 27, 2025
mpox Public
Nextstrain build for mpox virus

nextstrain/mpox’s past year of commit activity

Python 48 MIT 22 15 4 Updated Jun 27, 2025
docker-base Public
Docker image build for nextstrain/base

nextstrain/docker-base’s past year of commit activity

Shell 12 6 10 4 Updated Jun 27, 2025
fauna Public
RethinkDB database to support real-time virus analysis

nextstrain/fauna’s past year of commit activity

Python 34 AGPL-3.0 13 18 10 Updated Jun 27, 2025
ncov Public
Nextstrain build for SARS-CoV-2

nextstrain/ncov’s past year of commit activity

Python 1,353 MIT 406 72 23 Updated Jun 27, 2025
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur’s past year of commit activity

Python 271 AGPL-3.0 134 222 (1 issue needs help) 36 Updated Jun 27, 2025
nextclade Public
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

nextstrain/nextclade’s past year of commit activity

Rust 236 MIT 63 113 (34 issues need help) 20 Updated Jun 27, 2025
nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data’s past year of commit activity

Python 35 33 9 18 Updated Jun 27, 2025

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