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Nextstrain

Real-time tracking of pathogen evolution

194 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 406
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 271 132
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 302 168

Repositories

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Showing 10 of 95 repositories

ncov Public
Nextstrain build for SARS-CoV-2

nextstrain/ncov’s past year of commit activity

Python 1,353 MIT 406 72 22 Updated Jun 26, 2025
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur’s past year of commit activity

Python 271 AGPL-3.0 132 220 (1 issue needs help) 35 Updated Jun 26, 2025
docker-base Public
Docker image build for nextstrain/base

nextstrain/docker-base’s past year of commit activity

Shell 12 6 10 4 Updated Jun 25, 2025
mpox Public
Nextstrain build for mpox virus

nextstrain/mpox’s past year of commit activity

Python 48 MIT 22 19 5 Updated Jun 25, 2025
pathogen-repo-guide Public template

nextstrain/pathogen-repo-guide’s past year of commit activity

Python 4 1 21 0 Updated Jun 25, 2025
lassa Public
Nextstrain build for Lassa virus

nextstrain/lassa’s past year of commit activity

Python 1 5 7 1 Updated Jun 25, 2025
infra Public
Nextstrain shared infrastructure

nextstrain/infra’s past year of commit activity

Makefile 0 0 2 1 Updated Jun 25, 2025
norovirus Public

nextstrain/norovirus’s past year of commit activity

Python 0 MIT 0 5 2 Updated Jun 24, 2025
auspice Public
Web app for visualizing pathogen evolution

nextstrain/auspice’s past year of commit activity

JavaScript 302 AGPL-3.0 168 245 (4 issues need help) 37 Updated Jun 24, 2025
nextstrain.org Public
The Nextstrain website

nextstrain/nextstrain.org’s past year of commit activity

JavaScript 96 AGPL-3.0 50 73 14 Updated Jun 23, 2025

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