nextflow_schema.json: Any of --fasta or --genome
#471
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.2.1. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
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When the pipeline is launched with the parameter
--genomeset, the FastA file is normally obtained from theigenomes.configfile. However, the pipeline complains that--fastais not set in this situation. This PR changes the parameter validation to require that only--genomeor--fastabe set.Note: Linting currently fails with
FileNotFoundError: [Errno 2] No such file or directory: 'tests/nextflow.config', but this has nothing to do with this PR.PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.CHANGELOG.mdis updated.