8000 Increment support of netmhc tools by jonasscheid · Pull Request #166 · nf-core/epitopeprediction · GitHub
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Increment support of netmhc tools #166

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Merged
merged 3 commits into from
Jul 6, 2022
Merged

Increment support of netmhc tools #166

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8b0b293
increment supported netmhc tools
jonasscheid Jul 5, 2022
9975718
Merge branch 'nf-core:switch_to_epytope' into switch_to_epytope
jonasscheid Jul 5, 2022
59139ad
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jonasscheid Jul 6, 2022
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70 changes: 65 additions & 5 deletions assets/external_tools_meta.json
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Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,13 @@
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCpan-4.0/data.Linux.tar.gz",
"data_md5": "26cbbd99a38f6692249442aeca48608f",
"binary_name": "netMHCpan"
},
"4.1": {
"version": 4.1,
"software_md5": "105210d3de5525076347973e9391131c",
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCpan-4.1/data.tar.gz",
"data_md5": "4bdd3944cb4c5b8ba4d8900dae074c85",
"binary_name": "netMHCpan"
}
},
"netmhcpan_darwin": {
Expand All @@ -33,6 +40,13 @@
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCpan-4.0/data.Darwin.tar.gz",
"data_md5": "b4eef3c82852d677a98e0f7d753a36e2",
"binary_name": "netMHCpan"
},
"4.1": {
"version": 4.0,
"software_md5": "5f6eab43feb80a24e32eb02b22e9db5f",
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCpan-4.1/data.tar.gz",
"data_md5": "4bdd3944cb4c5b8ba4d8900dae074c85",
"binary_name": "netMHCpan"
}
},
"netmhcii": {
Expand All @@ -42,14 +56,60 @@
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCII-2.2/data.tar.gz",
"data_md5": "11579b61d3bfe13311f7b42fc93b4dd8",
"binary_name": "netMHCII"
},
"2.3": {
"version": 2.3,
"software_md5": "48f118c133990c9458ef82fa23ef901c",
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCII-2.3/data.Linux.tar.gz",
"data_md5": "675daa3614ab2ffea47751488caffd74",
"binary_name": "netMHCII-2.3"
}
},
"netmhcii_darwin": {
"2.2": {
"version": 2.2,
"software_md5": "1dfd0e69346a7e1d6c9b55cfeb70d744",
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCII-2.2/data.tar.gz",
"data_md5": "11579b61d3bfe13311f7b42fc93b4dd8",
"binary_name": "netMHCII"
},
"2.3": {
"version": 2.3,
"software_md5": "c944550e4f07a32ac52524a59e5bf89a",
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCII-2.3/data.Darwin.tar.gz",
"data_md5": "10fd5c94e716f3921d05ec3ffbb919b2",
"binary_name": "netMHCII-2.3"
}
},
"netmhciipan": {
"3.1": {
"version": 3.1,
"software_md5": "0962ce799f7a4c9631f8566a55237073",
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.1/data.tar.gz",
"data_md5": "f833df245378e60ca6e55748344a36f6",
"4.0": {
"version": 4.0,
"software_md5": "2bbdb95e20e9991be23e80223d216aef",
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCIIpan-4.0/data.tar.gz",
"data_md5": "ec3032cb66aee20ff0f53ff7f1795f47",
"binary_name": "netMHCIIpan"
},
"4.1": {
"version": 4.1,
"software_md5": "c70810798334e9f7614899b7ee965a3a",
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCIIpan-4.0/data.tar.gz",
"data_md5": "ec3032cb66aee20ff0f53ff7f1795f47",
"binary_name": "netMHCIIpan"
}
},
"netmhciipan_darwin": {
"4.0": {
"version": 4.0,
"software_md5": "56ccb1af3795142f2c544c4714f079fa",
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCIIpan-4.0/data.tar.gz",
"data_md5": "ec3032cb66aee20ff0f53ff7f1795f47",
"binary_name": "netMHCIIpan"
},
"4.1": {
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Also for documentation:
NetMHCIIpan 4.1 (Darwin & Linux) provid the data folder within the software tar, however we did not yet work around this problem. I just thought it would be of interest to have it in order to come up with a solution for this specific version

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Yes, we should definietly check if we can optimise the process for this case.

"version": 4.1,
"software_md5": "eaa25d39710da3a8000a5cfd36707f7b",
"data_url": "https://services.healthtech.dtu.dk/services/NetMHCIIpan-4.0/data.tar.gz",
"data_md5": "ec3032cb66aee20ff0f53ff7f1795f47",
"binary_name": "netMHCIIpan"
}
}
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