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Insights: nf-core/epitopeprediction
Overview
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- 6 Merged pull requests
- 0 Open pull requests
- 13 Closed issues
- 1 New issue
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1 Release published by 1 person
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3.0.0 3.0.0 - Wanne - 2025-05-09
published
May 9, 2025
6 Pull requests merged by 2 people
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Release 3.0.0
#277 merged
May 9, 2025 -
Release PR feedback
#283 merged
May 6, 2025 -
Important! Template update for nf-core/tools v3.2.1
#281 merged
May 2, 2025 -
Merge Template 3.2.1
#282 merged
May 2, 2025 -
Add
SUMMARIZE_RESULTSmodule and MultiQC plots#279 merged
Apr 29, 2025 -
Update docs and prepare release 3.0.0
#280 merged
Apr 28, 2025
13 Issues closed by 1 person
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Add syfpeithi module
#217 closed
May 9, 2025 -
JSON schema: Epitopeprediction
#273 closed
May 9, 2025 -
isSynonymous issue
#265 closed
May 9, 2025 -
Add bcftools stats with multiQC
#267 closed
May 9, 2025 -
Add percentile rank scores
#54 closed
May 9, 2025 -
nfcore module: csvtk_concat or cat (mergeResults)
#97 closed
May 9, 2025 -
Use nf-core modules
#193 closed
May 9, 2025 -
Proteome CLI flags of epaa and nextflow differ
#201 closed
May 9, 2025 -
Rewrite and move check_requested_models in input_check subworkflow
#207 closed
May 9, 2025 -
Add mhcnuggets module
#214 closed
May 9, 2025 -
Add mhcflurry module
#215 closed
May 9, 2025 -
Add netmhc(ii)pan module
#216 closed
May 9, 2025 -
Update general structure of MHCbinding subworkflow
#205 closed
May 9, 2025
1 Issue opened by 1 person
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Pipeline-wide nf-test
#284 opened
May 9, 2025
6 Unresolved conversations
Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.
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Peptides are sometimes removed in the output when an unmodified sequence in present in the input
#258 commented on
May 9, 2025 • 0 new comments -
epitopeprediction using mhcflurry vs running directly mhcflurry
#263 commented on
May 9, 2025 • 0 new comments -
BioMart request declined
#248 commented on
May 9, 2025 • 0 new comments -
VCF CDS_position parsing
#271 commented on
May 9, 2025 • 0 new comments -
Enable selection of Ensembl (BioMart) version
#75 commented on
May 9, 2025 • 0 new comments -
Add RNAseq table as input
#134 commented on
May 9, 2025 • 0 new comments