8000 Update Readme.md file with the latest version of nf-core/tools by varunshamanna · Pull Request #3035 · nf-core/modules · GitHub
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Update Readme.md file with the latest version of nf-core/tools #3035

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Update Readme.md file with the latest version of nf-core/tools #3035

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varunshamanna
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PR checklist

Closes #XXX

  • Changes the readme.md file
  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

@famosab
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famosab commented Mar 10, 2025

@mashehu This readme needs to be updated (sort of belongs to documentation) - maybe you can decide if we close this.

@SPPearce
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@mashehu This readme needs to be updated (sort of belongs to documentation) - maybe you can decide if we close this.

There was a comment from @ewels about generating this automatically at one point

@famosab
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famosab commented Apr 30, 2025

Closing this for now as 2.7. is outdated as well and we want to generate this. I will open an issue though.

@famosab famosab closed this Apr 30, 2025
@famosab famosab mentioned this pull request Apr 30, 2025
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@famosab famosab mentioned this pull request May 23, 2025
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2025 spring cleaning - modules (PRs)
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@varunshamanna @famosab @SPPearce
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