8000 Fix busco_clean parameter being enabled by default by prototaxites · Pull Request #419 · nf-core/mag · GitHub
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Fix busco_clean parameter being enabled by default #419

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Merged
merged 1 commit into from
Apr 11, 2023
Merged

Fix busco_clean parameter being enabled by default #419

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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -13,6 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

- Fix duplicated Zenodo badge in README (by @jfy133)
- Fix CheckM database always downloading, regardless if CheckM is selected (by @jfy133)
- Fix bug with busco_clean parameter, where it is always activated (by @prototaxites)

### `Dependencies`

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1 change: 1 addition & 0 deletions conf/test_binrefinement.config
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Expand Up @@ -31,4 +31,5 @@ params {
refine_bins_dastool = true
refine_bins_dastool_threshold = 0
postbinning_input = 'both'
busco_clean = true
}
2 changes: 1 addition & 1 deletion modules/local/busco.nf
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Expand Up @@ -178,7 +178,7 @@ process BUSCO {
fi

# if needed delete temporary BUSCO files
if [ ${busco_clean} ]; then
if [ ${busco_clean} = "Y" ]; then
find . -depth -type d -name "augustus_config" -execdir rm -rf "{}" \\;
find . -depth -type d -name "auto_lineage" -execdir rm -rf "{}" \\;
find . -depth -type d -name "run_*" -execdir rm -rf "{}" +
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