8000 Adapter trimming by edmundmiller · Pull Request #76 · nf-core/nascent · GitHub
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Adapter trimming #76

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Merged
merged 6 commits into from
Oct 17, 2022
Merged

Adapter trimming #76

merged 6 commits into from
Oct 17, 2022

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edmundmiller
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Closes #71

@edmundmiller edmundmiller added this to the v2.0.0 milestone Oct 17, 2022
@edmundmiller edmundmiller self-assigned this Oct 17, 2022
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github-actions bot commented Oct 17, 2022 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit cbbb815

+| ✅ 156 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗  12 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in README.md: Add full-sized test dataset and amend the paragraph below if applicable
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release
  • pipeline_todos - TODO string in test_full.config: Specify the paths to your full test data ( on nf-core/test-datasets or directly in repositories, e.g. SRA)
  • pipeline_todos - TODO string in test_full.config: Give any required params for the test so that command line flags are not needed
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.
  • pipeline_todos - TODO string in output.md: Write this documentation describing your workflow's output
  • schema_description - No description provided in schema for parameter: assay_type
  • schema_description - No description provided in schema for parameter: skip_grohmm
  • schema_description - No description provided in schema for parameter: filter_bed

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: .github/workflows/linting.yml

✅ Tests passed:

Run details

  • nf-core/tools version 2.6
  • Run at 2022-10-17 13:35:48

matthdsm
matthdsm requested changes Oct 17, 2022
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@edmundmiller edmundmiller requested a review from matthdsm October 17, 2022 13:34
@edmundmiller edmundmiller merged commit 2730d68 into dev Oct 17, 2022
@edmundmiller edmundmiller deleted the adapter-trimming branch October 17, 2022 13:51
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@matthdsm matthdsm matthdsm approved these changes

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