8000 Adapter trimming by edmundmiller · Pull Request #76 · nf-core/nascent · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

Adapter trimming #76

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Merged
8000 merged 6 commits into from
Oct 17, 2022
Merged

Adapter trimming #76

merged 6 commits into from
Oct 17, 2022

Conversation

edmundmiller
Copy link
Collaborator

Closes #71

@edmundmiller edmundmiller added this to the v2.0.0 milestone Oct 17, 2022
@edmundmiller edmundmiller self-assigned this Oct 17, 2022
@github-actions
Copy link
github-actions bot commented Oct 17, 2022 •
edited 8000
Loading

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit cbbb815

+| ✅ 156 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗  12 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in README.md: Add full-sized test dataset and amend the paragraph below if applicable
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release
  • pipeline_todos - TODO string in test_full.config: Specify the paths to your full test data ( on nf-core/test-datasets or directly in repositories, e.g. SRA)
  • pipeline_todos - TODO string in test_full.config: Give any required params for the test so that command line flags are not needed
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.
  • pipeline_todos - TODO string in output.md: Write this documentation describing your workflow's output
  • schema_description - No description provided in schema for parameter: assay_type
  • schema_description - No description provided in schema for parameter: skip_grohmm
  • schema_description - No description provided in schema for parameter: filter_bed

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: .github/workflows/linting.yml

✅ Tests passed:

Run details

  • nf-core/tools version 2.6
  • Run at 2022-10-17 13:35:48

matthdsm
matthdsm requested changes Oct 17, 2022
View reviewed changes
@edmundmiller edmundmiller requested a review from matthdsm October 17, 2022 13:34
@edmundmiller edmundmiller merged commit 2730d68 into dev Oct 17, 2022
@edmundmiller edmundmiller deleted the adapter-trimming branch October 17, 2022 13:51
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@matthdsm matthdsm matthdsm approved these changes

Assignees

@edmundmiller edmundmiller

Labels
None yet
Projects
None yet
Milestone
v2.0.0
Development

Successfully merging this pull request may close these issues.

Investigate adapter trimming
2 participants
@edmundmiller @matthdsm
0