Leto

@edmundmiller

What's Changed

Use singularity containers for PINTS by @edmundmiller in #137
Pass references as inputs by @edmundmiller in #139
Add HISAT2 by @edmundmiller in #140
build: Fix modules.json and bump subworkflows by @edmundmiller in #141
Add STAR aligner by @edmundmiller in #142
Update Modules by @edmundmiller in #147
Add citations to MultiQC by @edmundmiller in #149
Fix HOMER inputs by @edmundmiller in #151
Refactor tests by @edmundmiller in #152
Update HOMER docs by @edmundmiller in #154
Use BAM_RSEQC subworkflow by @edmundmiller in #155
Use official nf-test CI by @edmundmiller in #157
Cleanup output by @edmundmiller in #156
Fix GFFREAD bug by @edmundmiller in #162
style: Make version snapshots pretty by @edmundmiller in #163
Dynamic BWA MEM index memory by @edmundmiller in #166
Fix "Access to undefined parameter forwardStranded" warnings by @edmundmiller in #170
Clean up MultiQC and tests by @edmundmiller in #171
groHMM overhaul by @edmundmiller in #165
PINTS scatter gather by @edmundmiller in #174
Add HOMER uniqmap by @edmundmiller in #175
Clean groHMM publishing and remove each inputs by @edmundmiller in #178
chore: Remove old template by @edmundmiller in #179
Adopt nft-utils by @edmundmiller in #182
test(#57): Add uniqmap test by @edmundmiller in #177
chore: Fix config selectors by @edmundmiller in #173
Run lsp formatting by @edmundmiller in #180

Full Changelog: 2.2.0...2.3.0