8000 fixed some pipeline and module tests by jma1991 · Pull Request #43 · nf-core/rnasplice · GitHub
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fixed some pipeline and module tests #43

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Merged
merged 10 commits into from
Mar 15, 2023
Merged

fixed some pipeline and module tests #43

merged 10 commits into from
Mar 15, 2023

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jma1991
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@jma1991 jma1991 commented Mar 4, 2023

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/rnasplice branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Mar 4, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 3292677

+| ✅ 157 tests passed       |+
!| ❗   9 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in README.md: Add full-sized test dataset and amend the paragraph below if applicable
  • pipeline_todos - TODO string in README.md: Update the example "typical command" below used to run the pipeline
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in nextflow.config: Specify your pipeline's command line flags
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in ci.yml: You can customise CI pipeline run tests as required
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.2
  • Run at 2023-03-15 12:50:12

@jma1991 jma1991 requested a review from bensouthgate March 15, 2023 13:38
@bensouthgate bensouthgate merged commit 2ea3d38 into nf-core:dev Mar 15, 2023
@jma1991 jma1991 deleted the fix-module-tests branch March 15, 2023 21:59
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@bensouthgate bensouthgate bensouthgate approved these changes

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