8000 fix lint tests v1 by jma1991 · Pull Request #55 · nf-core/rnasplice · GitHub
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fix lint tests v1 #55

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Merged
merged 2 commits into from
May 19, 2023
Merged

fix lint tests v1 #55

merged 2 commits into from
May 19, 2023

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jma1991
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@jma1991 jma1991 commented May 19, 2023

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/rnasplice branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented May 19, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit bcbf67d

+| ✅ 158 tests passed       |+
!| ❗   6 tests had warnings |!

❗ Test warnings:

  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.
  • pipeline_todos - TODO string in ci.yml: You can customise CI pipeline run tests as required

✅ Tests passed:

Run details

  • nf-core/tools version 2.8
  • Run at 2023-05-19 15:33:52

@jma1991 jma1991 merged commit 2b8cde2 into nf-core:dev May 19, 2023
@jma1991 jma1991 deleted the fix-lint-tests branch May 23, 2023 08:13
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