8000 Patch release 2.0.1 by ramprasadn · Pull Request #536 · nf-core/raredisease · GitHub
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Patch release 2.0.1 #536

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Merged
merged 2 commits into from
Mar 25, 2024
Merged

Patch release 2.0.1 #536

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9534c95
change calls to casecalls
ramprasadn Mar 25, 2024
21658fb
update changelog and bump version
ramprasadn Mar 25, 2024
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6 changes: 6 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -3,6 +3,12 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## 2.0.1 - Asterix (Patch) [2024-03-25]

### `Fixed`

- Germlinecnvcaller subworkflow uses the output channel `casecalls` from germlinecnvcaller module instead of `calls` which was invalid. [#535](https://github.com/nf-core/raredisease/issues/535)

## 2.0.0 - Asterix [2024-03-18]

### `Added`
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4 changes: 2 additions & 2 deletions assets/multiqc_config.yml
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Expand Up @@ -3,9 +3,9 @@ custom_logo_url: https://github.com/nf-core/raredisease/
custom_logo_title: "nf-core/raredisease"

report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/raredisease/releases/tag/2.0.0" target="_blank">nf-core/raredisease</a>
This report has been generated by the <a href="https://github.com/nf-core/raredisease/releases/tag/2.0.1" target="_blank">nf-core/raredisease</a>
analysis pipeline. For information about how to interpret these results, please see the
<a href="https://nf-co.re/raredisease/2.0.0/docs/output" target="_blank">documentation</a>.
<a href="https://nf-co.re/raredisease/2.0.1/docs/output" target="_blank">documentation</a>.
report_section_order:
"nf-core-raredisease-methods-description":
order: -1000
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -293,7 +293,7 @@ manifest {
description = """call and score variants from WGS/WES of rare disease patients"""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
version = '2.0.0'
version = '2.0.1'
doi = ''
}

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2 changes: 1 addition & 1 deletion subworkflows/local/variant_calling/call_sv_germlinecnvcaller.nf
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Expand Up @@ -40,7 +40,7 @@ workflow CALL_SV_GERMLINECNVCALLER {

GATK4_GERMLINECNVCALLER ( ch_gcnvc_in )

GATK4_GERMLINECNVCALLER.out.calls.toList()
GATK4_GERMLINECNVCALLER.out.casecalls.toList()
.flatMap {reduce_input(it)}
.buffer (size: 2)
.combine(ch_gcnvcaller_model.collect{it[1]}.toList())
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