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Issues: nf-core/tools

[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
Open
Download: Fix support for Seqera Community Containers
#3179 opened Sep 24, 2024 by MatthiasZepper
Open 7
Renovate Dashboard 🤖
#2596 opened Dec 19, 2023 by renovate bot
Open
Beta
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Issues list

Automatically update Dependencies section in Changelog automation enhancement
#3560 opened May 6, 2025 by famosab
Bug with nf-core pipelines download bug Something isn't working
#3551 opened Apr 29, 2025 by ypriverol
1
Linting of patched module fails bug Something isn't working linting
#3540 opened Apr 17, 2025 by mashehu
1
Rename arm profile
#3536 opened Apr 11, 2025 by edmundmiller
12
manual nf-core pipelines sync deletes my pixi environment bug Something isn't working
#3534 opened Apr 10, 2025 by mahesh-panchal
6
Linting incorrectly parses the output path if it has options (like arity) bug Something isn't working
#3530 opened Apr 3, 2025 by Gullumluvl
@toniher
3
'modules lint' and 'subworkflow lint' should also ignore files from .gitignore linting
#3529 opened Apr 3, 2025 by Gullumluvl 3.4.0
Installing nf-core subworkflows causes error when subworkflow from other organization is present in modules.json bug Something isn't working
#3528 opened Apr 3, 2025 by thomas-tams
@mirpedrol @edmundmiller
Error when reinstalling subworkflows from modules.json via resolving missing modules from modules.json bug Something isn't working
#3526 opened Apr 2, 2025 by thomas-tams
@mirpedrol @edmundmiller
Add linting to prevent using oras protocol enhancement
#3520 opened Mar 31, 2025 by FriederikeHanssen
offline mode for commands like nf-core modules create enhancement
#3515 opened Mar 26, 2025 by Gullumluvl
1
Failed to find existing container image with 'nf-core modules create' bug Something isn't working
#3514 opened Mar 26, 2025 by Gullumluvl
Lint has a problem with reading file extensions containing env bug Something isn't working
#3513 opened Mar 26, 2025 by tdkaliki
@toniher
2
Issue with EDAM ontologies file extension bug Something isn't working
#3511 opened Mar 26, 2025 by toniher
@toniher
3
Havin an ssh remote for modules fails linting bug Something isn't working linting
#3510 opened Mar 25, 2025 by maxulysse
1
nf-test local modules/subworkflows of nf-core pipelines on GitHub actions enhancement
#3507 opened Mar 25, 2025 by vagkaratzas
nf-core pipelines launch ends in a stacktrace bug Something isn't working
#3500 opened Mar 24, 2025 by mahesh-panchal
Channel is not one of ['bioconda', 'conda-forge'] bug Something isn't working
#3499 opened Mar 24, 2025 by camlloyd
Tools pipeline tests use nf-test enhancement infrastructure nf-test pipeline-testing
#3497 opened Mar 21, 2025 by mirpedrol
lint fix not working with "*.sam" bug Something isn't working
#3496 opened Mar 21, 2025 by GallVp
Add check for default outdir to null enhancement
#3495 opened Mar 19, 2025 by maxulysse
1
pipelines download not working as expected? bug Something isn't working download nf-core download
#3490 opened Mar 14, 2025 by fellen31
Page not found: https://nf-co.re/tools/docs/ bug Something isn't working documentation good-first-issue
#3489 opened Mar 13, 2025 by MehrazRumman
4
Add subcommand for searching nf-core test-datasets command line tools Anything to do with the cli interfaces good-first-issue
#3487 opened Mar 11, 2025 by jfy133
@JulianFlesch
11
Error linting module that has the keyword val in its emit name bug Something isn't working good-first-issue
#3483 opened Mar 6, 2025 by AlexVCaron
1
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