v1.2.0 - Bouncy Basenji [2024-10-03]

@jfy133

#417 Added reference-free metagenome complexity/coverage estimation with Nonpareil (added by @jfy133)
#466 Input database sheets can specify a db_type column to distinguish between short- and long-read databases (added by @LilyAnderssonLee)
#505 Add small files to the file tower.yml (added by @LilyAnderssonLee)
#508 Add nanoq as a filtering tool for nanopore reads (added by @LilyAnderssonLee)
#511 Add porechop_abi as an alternative adapter removal tool for long reads nanopore data (added by @LilyAnderssonLee)
#512 Update all tools to the latest version and include nf-test (updated by @LilyAnderssonLee & @jfy133)
#537 Update the module motus/merge to the latest version (Updated by @sofstam & @LilyAnderssonLee)

#518 Fixed a bug where Oxford Nanopore FASTA input files would not be processed (❤️ to @ikarls for reporting, fixed by @jfy133)
#523 Removed hardcoded -m lca from GANON_CLASSIFY due to more options in new version of ganon (fixed by @LilyAnderssonLee & @jfy133)
#531 Fix FASTA input validation in schema allowing FASTQ extension, expand allowed FASTA extensions (fixed by @jfy133)
#512 Minor formatting and ordering improvements in MultiQC report (by @jfy133)
#532 - Added missing documentation behind the 'ignore' BRACKEN_BRACKEN error strategy (❤️ to @Mavti for reporting, fixed by @jfy133)
#536 - Redefine contents_re for filtlong to fix its missing from the MultiQC report (fixed by @LilyAnderssonLee)

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