8000 create BWA index for contamination reference if missing · Issue #8 · nf-core/vipr · GitHub
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create BWA index for contamination reference if missing #8

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andreas-wilm opened this issue May 15, 2018 · 1 comment
Open

create BWA index for contamination reference if missing #8

andreas-wilm opened this issue May 15, 2018 · 1 comment
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@andreas-wilm andreas-wilm added the enhancement New feature or request label May 15, 2018
@andreas-wilm andreas-wilm self-assigned this May 15, 2018
@ewels
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ewels commented May 15, 2018

Feel free to steal from nf-core/chipseq: https://github.com/nf-core/chipseq/blob/485fc2971c85c534bf9277e65959ddc8a17751ad/main.nf#L269-L290

andreas-wilm pushed a commit to andreas-wilm/vipr that referenced this issue Feb 7, 2019
Fixed testing setup and many minor nf-core compat issues (lint warnings)
a402a0e 
 - Added test profile and activated in travis.yaml
 - Added name to license (closes nf-core#25)
 - Fixed container version tagging (closes nf-core#28)
 - Upgraded Nextflow version dep
 - deleted test-data dir (now in nf-core testdata repo)
 - Fixed all nf-core lint problems (closes nf-core#10)
 - Contamination index now mandatory (closes nf-core#8)
 - Upgraded most programs (env.yaml)
 - Enabled --reads input (rather than just via params-file)

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