8000 finding QSM · Issue #196 · nighres/nighres · GitHub
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finding QSM #196

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shaharEd opened this issue Jul 11, 2023 · 3 comments
Open

finding QSM #196

shaharEd opened this issue Jul 11, 2023 · 3 comments

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@shaharEd
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Hi, we try to make some volumetry with nighres. the database looks like that
image
the nighres command requests T1, T2* and QSM - which I believe are here, but I can't find them. could you help us?
Thx
Shahar
@piloubazin
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piloubazin commented Jul 11, 2023 via email

@shaharEd
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Just to make sure - which of the files I have to use in order to create the QSM?

@piloubazin
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the t2star_multiecho is likely a flash-type sequence: you can get the T2* from fitting the magnitude, and the QSM from processing the phase (often both magnitude and phase, depending on the method you use)

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@piloubazin @shaharEd
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