8000 TR is not set in denoised BOLD files · Issue #119 · nipreps/fmripost-aroma · GitHub
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TR is not set in denoised BOLD files #119
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@tsalo

Description

@tsalo

What happened?

It looks like the TR is being set to 1.

Reported in https://neurostars.org/t/fmripost-aroma-fmripost-aroma-sets-repetition-time-to-1-0/33281.

What command did you use?

docker run --rm -it \
    -v "${FMRIPREP_DIR}:/prep:ro" \
    -v "${AROMA_DIR}:/out" \
    -v "${WORK_DIR}/${PROCESS}:/work" \
    nipreps/fmripost-aroma:main \
    /prep /out participant \
    --skip_bids_validation \
    --participant-label ${PNUM} \
    --task-id ${TASK} \
    --denoising-method nonaggr \
    --melodic-dimensionality 20 \
    --nprocs 8 \
    --omp-nthreads 2 \
    --mem 24000 \
    --notrack \
    -w /work

What command did you use to run fMRIPrep?

What version of fMRIPost-AROMA are you running?

0.1.11

How are you running fMRIPost-AROMA?

Docker

Is your data BIDS valid?

Yes

Please copy and paste any relevant log output.

Additional information / screenshots

No response

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