8000 AFNI Interfaces Refactor · nipy/nipype Wiki · GitHub
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AFNI Interfaces Refactor

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Chris Filo Gorgolewski edited this page Oct 16, 2013 · 1 revision

Use cases

  1. out_file not set

    -prefix is set to default_out.ext where ext is file extension taken from outputtype AFNICommandLineInputSpec field and default_out depends on the interface.

  2. out_file is set to something.nii or something.nii.gz

    -prefix is set to something.nii or something.nii.gz regardless of outputtype AFNICommandLineInputSpec field

  3. out_file is set to something (without extension)

    -prefix is set to something.ext where ext is file extension taken from outputtype AFNICommandLineInputSpec field

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