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SoLD_paper Public
This repository describes the pipeline, codes and results for the SoLD paper
R UpdatedJun 22, 2025 -
SAP_Lipidomics_Paper Public
This github page outlines the pipeline, codes and results for the paper SoLD.
MIT License UpdatedJun 6, 2025 -
Grain_Nitrogen Public
This GitHub repository contains all the relevant data, scripts, and documentation for our study on grain nitrogen in maize.
R MIT License UpdatedJun 4, 2025 -
Clayton_Nitrogen Public
This repository has all the data and the code for analysis for Nitrogen measurement in the leaf for BZea population using hyper-spectral data.
R MIT License UpdatedMay 14, 2025 -
SoLD Public
This GitHub repository contains all data, analysis, and resources related to the lipidomics study conducted on the Sorghum Association Panel.
R UpdatedMar 28, 2025 -
BZea_Introgression_Finder Public
Find your BZea lines for your favourite gene.
R MIT License UpdatedMar 24, 2025 -
GCN-GRN Public
This repository has all the codes related to GCN based GRN.
MIT License UpdatedNov 22, 2024 -
HiLo_Lipid Public
This github page outlines the prediction algorithm for HiLo lipids.
R MIT License UpdatedMay 27, 2024 -
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This github page is intended to serve as a repository for a Machine Learning for Phenotype Prediction
R MIT License UpdatedJan 30, 2024 -
SAP_lipids_GWAS Public
Sorghum Association Panel Lipid analysis in low Phosphorus
R MIT License UpdatedJan 28, 2024 -
Phosphorus_RNAseq Public
A repo containing working details for RNAseq analysis and its Gene Regulatory Network
R UpdatedJan 24, 2024 -
Clayton_2023 Public
This repository is for the phenotypes planted in Clayton, NC, but the Alvarez lab.
R UpdatedJan 12, 2024 -
PHG_ZeaGEA_kmer_GWAS Public
This repository exists to act as a reference for running the pipeline for running kmer-based GWAS for PHG imputed ZeaGEA accessions.
MIT License UpdatedJan 10, 2024 -
Diplo_introgression Public
This repository holds the introgression analysis pipeline and results for diploperennis.
R MIT License UpdatedJan 8, 2024 -
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Image-Segmentation Public
Image Segmentation using SAM and openCV
Jupyter Notebook MIT License UpdatedSep 28, 2023 -
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COMP_GWAS Public
Easy combination of SNP pvalues from GWAS data using GBJ package
Jupyter Notebook MIT License UpdatedMay 3, 2023 -
Illumina_PacBio_Hybrid Public
This github page defines the workflow for the joint analysis for Illumina and PacBio sequences
R UpdatedApr 18, 2023 -
harvester Public
Forked from sawers-rellan-labs/harvesterCombine candidate evidence from multiple sources
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Parallelizing Public
R code for parallelizing scripts to run on multiple cores
R GNU General Public License v3.0 UpdatedDec 29, 2022 -
ggBLUP Public
genomic prediction for gwas using SNPs and phenotype
Jupyter Notebook UpdatedDec 28, 2022 -
conda_r_skeleton_helper Public
Forked from bgruening/conda_r_skeleton_helperCleaning up Conda r-packages
Python MIT License UpdatedOct 15, 2022
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