Stars
A fast tool for detecting and decomposing segmental duplications in genome assemblies
Effector prediction pipeline based on protein properties.
A list of interesting genome browser and genome visualization programs
A software to assemble chloroplast and mitochodrial genomes using PacBio data
A single molecule sequence assembler for genomes large and small.
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…