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A curated collection of Nextflow implementation patterns

nextflow-io.github.io/patterns/

MIT license

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Name		Name	Last commit message	Last commit date
Latest commit History 101 Commits
.github/workflows		.github/workflows
data		data
docs		docs
scripts		scripts
.gitignore		.gitignore
LICENSE.txt		LICENSE.txt
README.md		README.md
channel-duplication.nf		channel-duplication.nf
collect-into-file.nf		collect-into-file.nf
conditional-process.nf		conditional-process.nf
conditional-process2.nf		conditional-process2.nf
conditional-resources.nf		conditional-resources.nf
create-key-to-combine-channels.nf		create-key-to-combine-channels.nf
feedback-loop-process.nf		feedback-loop-process.nf
feedback-loop-workflow.nf		feedback-loop-workflow.nf
ignore-failing-process.nf		ignore-failing-process.nf
mkdocs.yml		mkdocs.yml
nextflow.config		nextflow.config
optional-input.nf		optional-input.nf
optional-output.nf		optional-output.nf
process-collect.nf		process-collect.nf
process-get-workdir.nf		process-get-workdir.nf
process-into-groups.nf		process-into-groups.nf
process-per-csv-record.nf		process-per-csv-record.nf
process-per-file-chunk.nf		process-per-file-chunk.nf
process-per-file-output.nf		process-per-file-output.nf
process-per-file-pairs-custom.nf		process-per-file-pairs-custom.nf
process-per-file-pairs.nf		process-per-file-pairs.nf
process-per-file-path.nf		process-per-file-path.nf
process-per-file-range.nf		process-per-file-range.nf
process-when-empty.nf		process-when-empty.nf
publish-matching-glob.nf		publish-matching-glob.nf
publish-process-outputs.nf		publish-process-outputs.nf
publish-rename-outputs-subdirs.nf		publish-rename-outputs-subdirs.nf
publish-rename-outputs.nf		publish-rename-outputs.nf
skip-process-execution.nf		skip-process-execution.nf
sort-filepairs-by-samplename.nf		sort-filepairs-by-samplename.nf
state-dependency.nf		state-dependency.nf
task-batching.nf		task-batching.nf