8000 Tags · openvax/pyensembl · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

Tags: openvax/pyensembl

Tags

v2.3.13

Toggle v2.3.13's commit message 
fixed pyensembl list with lower min version

v2.3.12

Toggle v2.3.12's commit message

Verified

This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode 
Add support for downloading plant species with pyEnsembl (#305)

This commit introduces the ability to download plant species data using pyEnsembl. We've added the 'is_plant' parameter to the Species class, and registered two new species: Arabidopsis Thaliana and Oryza Sativa (Rice).

We've also added the ENSEMBL_PLANTS_FTP_SERVER URL, and the PLANTS_GTF_SUBDIR_TEMPLATE and PLANTS_FASTA_SUBDIR_TEMPLATE for creating the download links. The code checks if the species is a plant to determine which templates to use.

v2.3.11

Toggle v2.3.11's commit message 
small fixes

v2.3.10

Toggle v2.3.10's commit message 
fixed shell commands

v2.3.9

Toggle v2.3.9's commit message 
show coverage for main branch instead of master

v1.1.0

Toggle v1.1.0's commit message 
Updated Travis testing from Py3.4 -> Py3.5

v1.0.1

Toggle v1.0.1's commit message 
Added protein coding biotype tests (#166)

* added unit tests for Transcript.biotype and Gene.biotype

* version bump

v0.9.6

Toggle v0.9.6's commit message 
Merge pull request #163 from hammerlab/use-cached-ensembl-release-obj…

…ects-after-pickling

Deserialization should construct cached EnsemblRelease objects

v0.9.4

Toggle v0.9.4's commit message 
bump the minor version

v0.8.6

Toggle v0.8.6's commit message 
Merge pull request #156 from hammerlab/custom-cache-dir

Override cache dir if PYENSEMBL_CACHE_DIR is set (fixes #145)
0