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@CompEvol Computational Evolution Group

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    23 repositories

    • beast2

      Public
      Bayesian Evolutionary Analysis by Sampling Trees
      evolutionphylogeneticsbayesian-inferencejavabeastmcmc
      Java
      •
      GNU Lesser General Public License v2.1
      •85•252•194•0•Updated Jun 16, 2025Jun 16, 2025

    • beast2lang

      Public
      A declarative statistical modelling language that uses fully-resolved BEAST2 class names
      Java
      •0•1•5•0•Updated Jun 13, 2025Jun 13, 2025

    • CBAN

      Public
      releases of beast2 packaged zip files in a reliable location
      package-managerbeast2
      JavaScript
      •20•7•1•0•Updated Jun 6, 2025Jun 6, 2025

    • beast2-site

      Public
      beast2 web development site
      jekyllbeast2
      HTML
      •7•2•3•0•Updated Jun 1, 2025Jun 1, 2025

    • sampled-ancestors

      Public
      This BEAST2 package provides MCMC proposals and post-processing tools for sampling trees containing sampled ancestors
      bayesian-inferencemcmcbeast2java
      Java
      •
      GNU General Public License v3.0
      •12•7•6•3•Updated May 25, 2025May 25, 2025

    • CCD

      Public
      Conditional Clade Distribution package for BEAST 2
      Java
      •3•2•0•0•Updated May 20, 2025May 20, 2025

    • BeastFX

      Public
      GUIs for BEAST using Java FX to make things more pretty.
      Java
      •
      GNU Lesser General Public License v2.1
      •4•5•21•1•Updated May 20, 2025May 20, 2025

    • beastlauncher

      Public
      A general launcher utility for any main that wants to depend on local install of BEAST2 classes
      Shell
      •0•0•0•0•Updated May 1, 2025May 1, 2025

    • CCD-Research

      Public
      Information, scripts and data of CCD research papers
      Python
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • morph-models

      Public
      Models for dealing with morphological data
      beast2morphological-data
      Java
      •
      GNU Lesser General Public License v2.1
      •9•7•5•1•Updated Dec 10, 2023Dec 10, 2023

    • benchmark

      Public
      BEAST benchmarking data
      Perl
      •1•1•1•0•Updated Jan 5, 2023Jan 5, 2023

    • BEAST.app

      Public
      BEAST 2.7 package containing applications
      Java
      •0•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • packages

      Public
      Released BEAST 2 packages
      2•0•0•0•Updated Aug 11, 2022Aug 11, 2022

    • Covid4Island

      Public
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 21, 2021Jun 21, 2021

    • beastshell

      Public
      BeanShell scripting for BEAST2
      Java
      •
      GNU Lesser General Public License v2.1
      •1•0•1•0•Updated Mar 22, 2018Mar 22, 2018

    • TTBSP

      Public
      Materials for Taming the BEAST in the South Pacific
      TeX
      •0•0•0•0•Updated Jan 10, 2017Jan 10, 2017

    • beast1to2

      Public
      Convert BEAST 1 XML for BEAST 2
      Java
      •0•0•1•0•Updated Dec 7, 2016Dec 7, 2016

    • testXXX

      Public
      0•0•0•0•Updated Dec 4, 2016Dec 4, 2016

    • NZGOT

      Public
      The toolkit to analyse various types of data collected from New Zealand Genomic Observatory project
      bioinformaticsjava
      Java
      •
      GNU General Public License v2.0
      •2•3•0•0•Updated Aug 8, 2016Aug 8, 2016

    • beast2report

      Public
      Test report
      HTML
      •0•0•0•0•Updated Jun 1, 2016Jun 1, 2016

    • VCF2Patterns

      Public
      Python
      •0•0•0•0•Updated Apr 19, 2016Apr 19, 2016

    • phylodynamics

      Public
      For joint inference of genetic and epidemiological parameters. Repository has now moved to:
      0•1•0•0•Updated Oct 5, 2015Oct 5, 2015

    • compevol-slides

      Public
      A repository of presentation materials for giving talks on computational evolution.
      0•0•0•0•Updated May 21, 2013May 21, 2013
    0