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@cmmid Centre for mathematical modelling of infectious diseases

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    39 repositories

    • paramix

      Public
      a package for aggregating parameters and disaggregating outcomes from compartmental models
      R
      •
      Other
      •0•2•0•0•Updated Jun 9, 2025Jun 9, 2025

    • rjmc

      Public
      C++
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Apr 16, 2025Apr 16, 2025

    • h5n1_uk_scenario_modelling

      Public
      R
      •
      MIT License
      •3•3•2•0•Updated Apr 11, 2025Apr 11, 2025

    • comix_mobility

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • covidbcell

      Public
      R
      •
      MIT License
      •0•2•0•0•Updated Feb 18, 2025Feb 18, 2025

    • ptmc

      Public
      A general-purpose Parallel Tempering MCMC sampler
      C++
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Feb 8, 2025Feb 8, 2025

    • rsvie

      Public
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 31, 2024Dec 31, 2024

    • ab_boosting_published

      Public
      R
      •0•1•0•0•Updated Nov 27, 2024Nov 27, 2024

    • gettingstarted

      Public
      Some useful resources for new starters
      0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • .github

      Public
      0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • mtm

      Public
      R
      •
      Other
      •1•1•2•0•Updated Sep 13, 2024Sep 13, 2024

    • effestimator

      Public
      R
      •1•2•0•0•Updated Aug 21, 2024Aug 21, 2024

    • ringbp

      Public
      R
      •
      Other
      •23•53•1•0•Updated Jan 18, 2024Jan 18, 2024

    • rsvmabmat

      Public
      R
      •0•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • covidm_reports

      Public
      LMIC reports using the covidm model framework
      R
      •6•10•1•2•Updated Oct 5, 2023Oct 5, 2023

    • covid_quar_test_import_risk

      Public
      R
      •
      MIT License
      •0•1•0•0•Updated Jun 30, 2023Jun 30, 2023

    • MTM-2023

      Public
      MTM material, 2023 (package) version
      R
      •
      Other
      •6•2•17•1•Updated May 13, 2023May 13, 2023

    • cmmid.github.io

      Public
      HTML
      •14•33•2•1•Updated May 8, 2023May 8, 2023

    • hhh4-workshop

      Public
      Workshop on hhh4 and the endemic-epidemic framework
      HTML
      •4•17•1•0•Updated Oct 13, 2022Oct 13, 2022

    • SA2UK

      Public
      R
      •0•9•1•0•Updated Aug 9, 2022Aug 9, 2022

    • rsv_resceu_compare

      Public
      Code for the RESCEU model comparison work
      C++
      •0•0•0•0•Updated Mar 29, 2022Mar 29, 2022

    • hero-study

      Public
      R
      •0•4•0•0•Updated Mar 1, 2022Mar 1, 2022

    • quar_test_contact_tracing

      Public
      R
      •4•3•1•0•Updated Oct 14, 2021Oct 14, 2021

    • covidTestVac

      Public
      TeX
      •
      MIT License
      •0•0•0•0•Updated Sep 29, 2021Sep 29, 2021

    • pcr_entry_screening_eurosurv

      Public
      R
      •0•0•0•0•Updated Sep 28, 2021Sep 28, 2021

    • coronavirus_immunity

      Public
      code for paper - fitting seasonal coronavirus and simulating covid
      R
      •
      MIT License
      •1•0•0•0•Updated Sep 6, 2021Sep 6, 2021

    • uk_fb_population_estimation

      Public
      Repository for source code to estimate population changes in the UK with Facebook population data
      R
      •
      MIT License
      •0•1•0•0•Updated Aug 17, 2021Aug 17, 2021

    • vaxco

      Public
      R
      •1•3•0•0•Updated Jul 29, 2021Jul 29, 2021

    • SoftwareChatter

      Public
      Software engineering discussion group resources
      HTML
      •2•4•0•0•Updated Jul 26, 2021Jul 26, 2021

    • uk_movement_communities_covid

      Public
      Repository of code for the publication: "Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19." Gibbs et al. 2021.
      R
      •
      MIT License
      •1•2•1•0•Updated May 21, 2021May 21, 2021
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